PH01001057G0380's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G31130 : 1.30E-52
Blast annotation: Protein of unknown function (DUF1218)
2.Location
Scaffold: PH01001057
Strand: +
| Region | Start | End |
| gene | 268409 | 272227 |
| mRNA | 268409 | 272227 |
| exon | 268409 | 270425 |
| exon | 270705 | 270848 |
| exon | 271160 | 271374 |
| exon | 271821 | 272094 |
| exon | 272213 | 272227 |
| CDS | 270333 | 270425 |
| CDS | 270705 | 270848 |
| CDS | 271160 | 271374 |
| CDS | 271821 | 272094 |
| CDS | 272213 | 272224 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06749.11 | DUF1218 | 61 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.