PH01001058G0290's details annotation
1.Annotation
ICBR annotation: transposon protein, putative, unclassified, expressed
Blast result AT3G16150 : 1.00E-144
Blast annotation: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
2.Location
Scaffold: PH01001058
Strand: -
| Region | Start | End |
| gene | 180744 | 184344 |
| mRNA | 180744 | 184344 |
| exon | 180744 | 181598 |
| exon | 181695 | 181781 |
| exon | 183832 | 184344 |
| CDS | 181089 | 181598 |
| CDS | 181695 | 181781 |
| CDS | 183832 | 184227 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000189 | phosphate ion transport, cellular carbohydrate metabolic process, malate metabolic process, L-malate dehydrogenase activity, inorganic phosphate transmembrane transporter activity, malate dehydrogenase activity, Carbon_fixation_in_photosynthetic_organisms Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glyoxylate_and_dicarboxylate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01112.17 | Asparaginase_2 | 4 | 329 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.