PH01001076G0540's details annotation
1.Annotation
ICBR annotation: ATP-dependent RNA helicase, putative, expressed
Blast result AT2G35340 : 2.30E-44
Blast annotation: helicase domain-containing protein
2.Location
Scaffold: PH01001076
Strand: +
| Region | Start | End |
| gene | 362684 | 364150 |
| mRNA | 362684 | 364150 |
| exon | 362684 | 363022 |
| exon | 363113 | 363180 |
| exon | 363327 | 363389 |
| exon | 363471 | 363543 |
| exon | 363580 | 364150 |
| CDS | 362908 | 363022 |
| CDS | 363113 | 363180 |
| CDS | 363327 | 363389 |
| CDS | 363471 | 363543 |
| CDS | 363580 | 363689 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07717.15 | OB_NTP_bind | 49 | 98 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.