Annotation of co-expression genes

PH01001083G0400's details annotation

1.Annotation

ICBR annotation: CAMK_CAMK_like.43 - CAMK includes calcium/calmodulin depedent protein kinases, expressed

Blast result AT1G35670 : 0.00E+00
Blast annotation: calcium-dependent protein kinase 2

2.Location

Scaffold: PH01001083
Strand: -

RegionStartEnd
gene275844280882
mRNA275844280882
exon275844277522
exon277621277845
exon277964278131
exon278692278807
exon278927279079
exon279168279377
exon280140280882
CDS277391277522
CDS277621277845
CDS277964278131
CDS278692278807
CDS278927279079
CDS279168279377
CDS280140280734

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000859RLK-Pelle_LRR-Xa (from iTAK)
transcription termination, DNA-dependent,
thylakoid membrane,
photosystem I,
CAMK_CDPK (from iTAK)
Photosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase44324
PF13499.5EF-hand_7372432
PF13499.5EF-hand_7444503

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005509calcium ion binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.