PH01001087G0490's details annotation
1.Annotation
ICBR annotation: AT hook motif domain containing protein, expressed
Blast result AT5G51590 : 9.50E-41
Blast annotation: AT hook motif DNA-binding family protein
2.Location
Scaffold: PH01001087
Strand: +
| Region | Start | End |
| gene | 347911 | 352953 |
| mRNA | 347911 | 352953 |
| exon | 347911 | 349184 |
| exon | 350174 | 350244 |
| exon | 351419 | 351547 |
| exon | 351816 | 351977 |
| exon | 352316 | 352953 |
| CDS | 348641 | 349184 |
| CDS | 350174 | 350244 |
| CDS | 351419 | 351547 |
| CDS | 351816 | 351977 |
| CDS | 352316 | 352495 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02178.18 | AT_hook | 85 | 96 |
| PF02178.18 | AT_hook | 162 | 167 |
| PF03479.14 | DUF296 | 195 | 309 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.