PH01001115G0660's details annotation
1.Annotation
ICBR annotation: OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed
Blast result AT2G39900 : 8.20E-85
Blast annotation: GATA type zinc finger transcription factor family protein
2.Location
Scaffold: PH01001115
Strand: -
| Region | Start | End |
| gene | 368877 | 372024 |
| mRNA | 368877 | 372024 |
| exon | 368877 | 369318 |
| exon | 369669 | 369758 |
| exon | 369884 | 369921 |
| exon | 370030 | 370129 |
| exon | 370488 | 372024 |
| CDS | 369085 | 369318 |
| CDS | 369669 | 369758 |
| CDS | 369884 | 369921 |
| CDS | 370030 | 370129 |
| CDS | 370488 | 370619 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000519 | LIM Transcription_Regulator(from iTAK) mitochondrial inner membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | LIM |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00412.21 | LIM | 9 | 64 |
| PF00412.21 | LIM | 108 | 163 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.