PH01001182G0430's details annotation
1.Annotation
ICBR annotation: coatomer subunit beta-2, putative, expressed
Blast result AT3G15980 : 6.60E-35
Blast annotation: Coatomer, beta subunit
2.Location
Scaffold: PH01001182
Strand: -
| Region | Start | End |
| gene | 324044 | 327892 |
| mRNA | 324044 | 327892 |
| exon | 324044 | 325964 |
| exon | 326406 | 326538 |
| exon | 327148 | 327254 |
| exon | 327718 | 327892 |
| CDS | 325818 | 325964 |
| CDS | 326406 | 326538 |
| CDS | 327148 | 327254 |
| CDS | 327718 | 327789 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001548 | protein methyltransferase activity, proton-transporting ATP synthase complex, catalytic core F(1), clathrin adaptor complex, proton-transporting ATPase activity, rotational mechanism, O-methyltransferase activity, hydrogen ion transporting ATP synthase activity, rotational mechanism, protein methylation, ATP synthesis coupled proton transport, |
| coexpression network | CFinderM001604 | GT31 GlycosylTransferases Nucleotide_excision_repair guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding DNA metabolic process, G-protein coupled receptor signaling pathway, nuclease activity, endoplasmic reticulum, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.