PH01001182G0460's details annotation
1.Annotation
ICBR annotation: coatomer subunit beta, putative, expressed
Blast result AT1G79990 : 7.00E-100
Blast annotation: structural molecules
2.Location
Scaffold: PH01001182
Strand: -
| Region | Start | End |
| gene | 341763 | 345494 |
| mRNA | 341763 | 345494 |
| exon | 341763 | 341984 |
| exon | 342022 | 342087 |
| exon | 342160 | 342291 |
| exon | 342397 | 342722 |
| exon | 343999 | 344053 |
| exon | 344169 | 345494 |
| CDS | 341787 | 341984 |
| CDS | 342022 | 342087 |
| CDS | 342160 | 342291 |
| CDS | 342397 | 342722 |
| CDS | 343999 | 344053 |
| CDS | 344169 | 344171 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001768 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, Nucleotide_excision_repair G-protein coupled receptor signaling pathway, DNA metabolic process, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding nuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 51 | 87 |
| PF00400.31 | WD40 | 94 | 131 |
| PF00400.31 | WD40 | 137 | 175 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.