PH01001226G0080's details annotation
1.Annotation
ICBR annotation: GAMM1 protein-like, putative, expressed
Blast result AT5G41970 : 3.00E-158
Blast annotation: Metal-dependent protein hydrolase
2.Location
Scaffold: PH01001226
Strand: +
| Region | Start | End |
| gene | 36177 | 41659 |
| mRNA | 36177 | 41659 |
| exon | 36177 | 37435 |
| exon | 37966 | 38112 |
| exon | 38445 | 38543 |
| exon | 39710 | 39901 |
| exon | 40031 | 40150 |
| exon | 40584 | 40655 |
| exon | 41110 | 41659 |
| CDS | 37244 | 37435 |
| CDS | 37966 | 38112 |
| CDS | 38445 | 38543 |
| CDS | 39710 | 39901 |
| CDS | 40031 | 40150 |
| CDS | 40584 | 40655 |
| CDS | 41110 | 41334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001359 | CMGC_Pl-Tthe (from iTAK) Regulation_of_autophagy C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001438 | HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001823 | large ribosomal subunit, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03690.12 | UPF0160 | 28 | 346 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.