PH01001253G0460's details annotation
1.Annotation
ICBR annotation: nucleic acid binding protein, putative, expressed
Blast result AT3G07030 : 5.10E-52
Blast annotation: Alba DNA/RNA-binding protein
2.Location
Scaffold: PH01001253
Strand: -
| Region | Start | End |
| gene | 319635 | 324329 |
| mRNA | 319635 | 324329 |
| exon | 319635 | 319770 |
| exon | 320588 | 320836 |
| exon | 320910 | 321013 |
| exon | 321131 | 321390 |
| exon | 321465 | 321545 |
| exon | 323000 | 324329 |
| CDS | 319676 | 319770 |
| CDS | 320588 | 320836 |
| CDS | 320910 | 321013 |
| CDS | 321131 | 321390 |
| CDS | 321465 | 321545 |
| CDS | 323000 | 323122 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01918.20 | Alba | 19 | 82 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.