Annotation of co-expression genes

PH01001268G0460's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, putative, expressed

Blast result AT2G33435 : 1.10E-43
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01001268
Strand: +

RegionStartEnd
gene333150337119
mRNA333150337119
exon333150336761
exon336879337119
CDS335187336761
CDS336879337061

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000946SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
actin cytoskeleton organization,
transcription initiation, DNA-dependent,
mitochondrial respiratory chain,
sister_chromatid_cohesion
chromosome condensation,
CMGC_MAPK (from iTAK)
actin binding,
chromosome organization,
ribulose-phosphate 3-epimerase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1484560

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomesplicing factor U2AF 65 kDa subunitko03041K12837

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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