PH01001273G0090's details annotation
1.Annotation
ICBR annotation: peptidyl-prolyl cis-trans isomerase, putative, expressed
Blast result AT3G66654 : 1.90E-28
Blast annotation: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
2.Location
Scaffold: PH01001273
Strand: -
| Region | Start | End |
| gene | 52253 | 57747 |
| mRNA | 52253 | 57747 |
| exon | 52253 | 52717 |
| exon | 53209 | 53415 |
| exon | 54330 | 54521 |
| exon | 55220 | 55292 |
| exon | 56866 | 56951 |
| exon | 57703 | 57747 |
| CDS | 52631 | 52717 |
| CDS | 53209 | 53415 |
| CDS | 54330 | 54521 |
| CDS | 55220 | 55292 |
| CDS | 56866 | 56951 |
| CDS | 57703 | 57741 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001011 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) protein folding, peptidyl-prolyl cis-trans isomerase activity, hydrolase_activity,_acting_on_acid_anhydrides |
| coexpression network | CFinderM001292 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) CAMK_CDPK (from iTAK) vesicle docking involved in exocytosis, endoplasmic reticulum, Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00160.20 | Pro_isomerase | 15 | 129 |
| PF00160.20 | Pro_isomerase | 150 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity |
| GO:0006457 | protein folding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.