PH01001276G0580's details annotation
1.Annotation
ICBR annotation: YIF1B, putative, expressed
Blast result AT1G30890 : 7.70E-87
Blast annotation: Integral membrane HRF1 family protein
2.Location
Scaffold: PH01001276
Strand: -
| Region | Start | End |
| gene | 372836 | 374927 |
| mRNA | 372836 | 374927 |
| exon | 372836 | 373876 |
| exon | 373959 | 374110 |
| exon | 374383 | 374927 |
| CDS | 373495 | 373876 |
| CDS | 373959 | 374110 |
| CDS | 374383 | 374571 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001287 | cellular process, homocysteine S-methyltransferase activity, Cysteine_and_methionine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03878.14 | YIF1 | 64 | 235 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.