PH01001287G0020's details annotation
1.Annotation
ICBR annotation: glycosyl transferase 8 domain containing protein, putative, expressed
Blast result AT5G18480 : 1.00E-103
Blast annotation: plant glycogenin-like starch initiation protein 6
2.Location
Scaffold: PH01001287
Strand: -
| Region | Start | End |
| gene | 7681 | 20368 |
| mRNA | 7681 | 20368 |
| exon | 7681 | 8721 |
| exon | 8969 | 9139 |
| exon | 9985 | 10023 |
| exon | 10391 | 10431 |
| exon | 12403 | 12491 |
| exon | 13189 | 13312 |
| exon | 13997 | 14098 |
| exon | 14183 | 14345 |
| exon | 15294 | 15401 |
| exon | 16030 | 16178 |
| exon | 17685 | 17852 |
| exon | 17959 | 18079 |
| exon | 18513 | 20368 |
| CDS | 8560 | 8721 |
| CDS | 8969 | 9139 |
| CDS | 9985 | 10023 |
| CDS | 10391 | 10431 |
| CDS | 12403 | 12491 |
| CDS | 13189 | 13312 |
| CDS | 13997 | 14098 |
| CDS | 14183 | 14345 |
| CDS | 15294 | 15401 |
| CDS | 16030 | 16178 |
| CDS | 17685 | 17852 |
| CDS | 17959 | 18079 |
| CDS | 18513 | 18746 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000374 | AUX/IAA Transcription_Regulator(from iTAK) GT8 GlycosylTransferases Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT8 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.