Annotation of co-expression genes

PH01001298G0390's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, expressed

Blast result AT1G60650 : 1.70E-45
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

2.Location

Scaffold: PH01001298
Strand: -

RegionStartEnd
gene254721259242
mRNA254721259242
exon254721256290
exon258387259242
CDS255508256290
CDS258387258497

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1978
PF00098.22zf-CCHC122136

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomeheterogeneous nuclear ribonucleoprotein Gko03041K12885

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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