PH01001328G0330's details annotation
1.Annotation
ICBR annotation: endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Blast result AT3G58560 : 0
Blast annotation: DNAse I-like superfamily protein
2.Location
Scaffold: PH01001328
Strand: +
| Region | Start | End |
| gene | 179115 | 186496 |
| mRNA | 179115 | 186496 |
| exon | 179115 | 179999 |
| exon | 180639 | 181401 |
| exon | 182060 | 182146 |
| exon | 182221 | 182304 |
| exon | 182386 | 182472 |
| exon | 182572 | 182658 |
| exon | 183431 | 183484 |
| exon | 183576 | 183667 |
| exon | 183711 | 183882 |
| exon | 183966 | 184116 |
| exon | 185074 | 185145 |
| exon | 185768 | 186496 |
| CDS | 179980 | 179999 |
| CDS | 180639 | 181401 |
| CDS | 182060 | 182146 |
| CDS | 182221 | 182304 |
| CDS | 182386 | 182472 |
| CDS | 182572 | 182658 |
| CDS | 183431 | 183484 |
| CDS | 183576 | 183667 |
| CDS | 183711 | 183882 |
| CDS | 183966 | 184116 |
| CDS | 185074 | 185145 |
| CDS | 185768 | 185922 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15801.4 | zf-C6H2 | 25 | 64 |
| PF03372.22 | Exo_endo_phos | 213 | 544 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | CCR4-NOT transcription complex subunit 6[EC:3.1.-.-] | ko03018 | K12603 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.