PH01001353G0060's details annotation
1.Annotation
ICBR annotation: transcription factor S-II, central domain containing protein, expressed
Blast result AT5G25520 : 7.00E-126
Blast annotation: SPOC domain / Transcription elongation factor S-II protein
2.Location
Scaffold: PH01001353
Strand: -
| Region | Start | End |
| gene | 36473 | 46050 |
| mRNA | 36473 | 46050 |
| exon | 36473 | 37769 |
| exon | 37862 | 37921 |
| exon | 39505 | 39625 |
| exon | 41254 | 46050 |
| CDS | 36735 | 37769 |
| CDS | 37862 | 37921 |
| CDS | 39505 | 39625 |
| CDS | 41254 | 43382 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001083 | MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Pseudo ARR-B Transcription_Regulator(from iTAK) protein import into mitochondrial inner membrane, transcription, DNA-dependent, nucleus, IWS1 Transcription_Regulator(from iTAK) GNAT Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07500.13 | TFIIS_M | 345 | 429 |
| PF07744.12 | SPOC | 687 | 830 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006351 | transcription, DNA-dependent |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.