PH01001353G0410's details annotation
1.Annotation
ICBR annotation: PINHEAD, putative, expressed
Blast result AT5G43810 : 0.00E+00
Blast annotation: Stabilizer of iron transporter SufD / Polynucleotidyl transferase
2.Location
Scaffold: PH01001353
Strand: +
| Region | Start | End |
| gene | 297777 | 307426 |
| mRNA | 297777 | 307426 |
| exon | 297777 | 299419 |
| exon | 299518 | 299732 |
| exon | 299847 | 299993 |
| exon | 300086 | 300219 |
| exon | 300312 | 300421 |
| exon | 300899 | 301005 |
| exon | 302252 | 302390 |
| exon | 302505 | 302621 |
| exon | 302980 | 303063 |
| exon | 303160 | 303231 |
| exon | 303325 | 303447 |
| exon | 303572 | 303731 |
| exon | 303872 | 303993 |
| exon | 304112 | 304249 |
| exon | 304332 | 304474 |
| exon | 304746 | 304808 |
| exon | 304925 | 304983 |
| exon | 305298 | 305371 |
| exon | 305595 | 305642 |
| exon | 306008 | 306078 |
| exon | 306173 | 306236 |
| exon | 306322 | 306457 |
| exon | 306556 | 306629 |
| exon | 306905 | 306999 |
| exon | 307100 | 307131 |
| exon | 307237 | 307426 |
| CDS | 299018 | 299419 |
| CDS | 299518 | 299732 |
| CDS | 299847 | 299993 |
| CDS | 300086 | 300219 |
| CDS | 300312 | 300421 |
| CDS | 300899 | 301005 |
| CDS | 302252 | 302390 |
| CDS | 302505 | 302621 |
| CDS | 302980 | 303063 |
| CDS | 303160 | 303231 |
| CDS | 303325 | 303447 |
| CDS | 303572 | 303731 |
| CDS | 303872 | 303993 |
| CDS | 304112 | 304249 |
| CDS | 304332 | 304474 |
| CDS | 304746 | 304808 |
| CDS | 304925 | 304983 |
| CDS | 305298 | 305371 |
| CDS | 305595 | 305642 |
| CDS | 306008 | 306078 |
| CDS | 306173 | 306236 |
| CDS | 306322 | 306457 |
| CDS | 306556 | 306629 |
| CDS | 306905 | 306999 |
| CDS | 307100 | 307131 |
| CDS | 307237 | 307412 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000047 | isomerase activity, Brassinosteroid_biosynthesis carbohydrate metabolic process, carbohydrate binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16486.4 | ArgoN | 113 | 248 |
| PF08699.9 | ArgoL1 | 258 | 308 |
| PF02170.21 | PAZ | 315 | 440 |
| PF16488.4 | ArgoL2 | 451 | 488 |
| PF16487.4 | ArgoMid | 499 | 577 |
| PF02171.16 | Piwi | 591 | 783 |
| PF02171.16 | Piwi | 835 | 993 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.