Annotation of co-expression genes

PH01001359G0120's details annotation

1.Annotation

ICBR annotation: STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed

Blast result AT3G13530 : 3.00E-125
Blast annotation: mitogen-activated protein kinase kinase kinase 7

2.Location

Scaffold: PH01001359
Strand: +

RegionStartEnd
gene8347892247
mRNA8347892247
exon8347883832
exon8395184085
exon8582685846
exon8629886371
exon8647686566
exon8663786720
exon8732287423
exon8820788382
exon9020290304
exon9044890837
exon9149992247
CDS8377383832
CDS8395184085
CDS8582685846
CDS8629886371
CDS8647686566
CDS8663786720
CDS8732287423
CDS8820788382
CDS9020290304
CDS9044890837
CDS9149991612

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001315STE_STE-Pl (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase21221

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.