PH01001385G0350's details annotation
1.Annotation
ICBR annotation: BCAS2 protein, putative, expressed
Blast result AT3G18165 : 2.00E-60
Blast annotation: modifier of snc1,4
2.Location
Scaffold: PH01001385
Strand: +
| Region | Start | End |
| gene | 253541 | 261600 |
| mRNA | 253541 | 261600 |
| exon | 253541 | 253952 |
| exon | 256490 | 256665 |
| exon | 257589 | 257672 |
| exon | 258060 | 258129 |
| exon | 258314 | 258351 |
| exon | 258968 | 259053 |
| exon | 260818 | 261600 |
| CDS | 253704 | 253952 |
| CDS | 256490 | 256665 |
| CDS | 257589 | 257672 |
| CDS | 258060 | 258129 |
| CDS | 258314 | 258351 |
| CDS | 258968 | 259053 |
| CDS | 260818 | 261221 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05700.10 | BCAS2 | 32 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | pre-mRNA-splicing factor SPF27 | ko03041 | K12861 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006397 | mRNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.