PH01001393G0080's details annotation
1.Annotation
ICBR annotation: regulator of chromosome condensation, putative, expressed
Blast result AT4G14368 : 0.00E+00
Blast annotation: Regulator of chromosome condensation (RCC1) family protein
2.Location
Scaffold: PH01001393
Strand: -
| Region | Start | End |
| gene | 38208 | 48634 |
| mRNA | 38208 | 48634 |
| exon | 38208 | 38536 |
| exon | 38630 | 39063 |
| exon | 39265 | 39403 |
| exon | 39449 | 41532 |
| exon | 41878 | 41994 |
| exon | 42138 | 42224 |
| exon | 42438 | 42527 |
| exon | 43450 | 43536 |
| exon | 44362 | 44544 |
| exon | 45520 | 45744 |
| exon | 46792 | 46810 |
| exon | 47153 | 47199 |
| exon | 47311 | 47430 |
| exon | 47553 | 47711 |
| exon | 47914 | 48133 |
| exon | 48231 | 48267 |
| exon | 48353 | 48634 |
| CDS | 38386 | 38536 |
| CDS | 38630 | 39063 |
| CDS | 39265 | 39403 |
| CDS | 39449 | 41532 |
| CDS | 41878 | 41994 |
| CDS | 42138 | 42224 |
| CDS | 42438 | 42527 |
| CDS | 43450 | 43536 |
| CDS | 44362 | 44544 |
| CDS | 45520 | 45744 |
| CDS | 46792 | 46810 |
| CDS | 47153 | 47199 |
| CDS | 47311 | 47430 |
| CDS | 47553 | 47711 |
| CDS | 47914 | 48133 |
| CDS | 48231 | 48267 |
| CDS | 48353 | 48398 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03083.15 | MtN3_slv | 13 | 98 |
| PF03083.15 | MtN3_slv | 133 | 210 |
| PF00415.17 | RCC1 | 621 | 669 |
| PF00415.17 | RCC1 | 672 | 722 |
| PF00415.17 | RCC1 | 727 | 776 |
| PF00415.17 | RCC1 | 792 | 838 |
| PF00415.17 | RCC1 | 841 | 890 |
| PF00415.17 | RCC1 | 895 | 942 |
| PF01363.20 | FYVE | 946 | 1011 |
| PF13713.5 | BRX_N | 1202 | 1237 |
| PF08381.10 | BRX | 1336 | 1389 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005543 | phospholipid binding |
| GO:0016021 | integral to membrane |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.