PH01001411G0090's details annotation
1.Annotation
ICBR annotation: major facilitator superfamily domain-containing protein 5, putative, expressed
Blast result AT1G64650 : 0.00E+00
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01001411
Strand: -
| Region | Start | End |
| gene | 44844 | 47928 |
| mRNA | 44844 | 47928 |
| exon | 44844 | 45029 |
| exon | 45095 | 45206 |
| exon | 45386 | 45601 |
| exon | 45703 | 45965 |
| exon | 46055 | 46325 |
| exon | 47149 | 47317 |
| exon | 47412 | 47556 |
| exon | 47713 | 47928 |
| CDS | 44986 | 45029 |
| CDS | 45095 | 45206 |
| CDS | 45386 | 45601 |
| CDS | 45703 | 45965 |
| CDS | 46055 | 46325 |
| CDS | 47149 | 47317 |
| CDS | 47412 | 47556 |
| CDS | 47713 | 47863 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001524 | diphosphomevalonate decarboxylase activity, Peroxisome 6-phosphofructokinase complex, Terpenoid_backbone_biosynthesis RWP-RK Transcription_Regulator(from iTAK) Nin-like Transcription_Regulator(from PlantTFDB) 6-phosphofructokinase activity, GRAS Transcription_Regulator(from PlantTFDB) isoprenoid biosynthetic process, glycolysis, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05631.13 | MFS_5 | 4 | 357 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.