PH01001418G0300's details annotation
1.Annotation
ICBR annotation: GYF domain containing protein, putative, expressed
Blast result AT1G24300 : 2.70E-96
Blast annotation: GYF domain-containing protein
2.Location
Scaffold: PH01001418
Strand: +
| Region | Start | End |
| gene | 198900 | 207553 |
| mRNA | 198900 | 207553 |
| exon | 198900 | 199250 |
| exon | 199379 | 199450 |
| exon | 199732 | 199802 |
| exon | 199943 | 200800 |
| exon | 200902 | 200995 |
| exon | 201123 | 201971 |
| exon | 202088 | 204251 |
| exon | 204977 | 205119 |
| exon | 205514 | 207553 |
| CDS | 199208 | 199250 |
| CDS | 199379 | 199450 |
| CDS | 199732 | 199802 |
| CDS | 199943 | 200800 |
| CDS | 200902 | 200995 |
| CDS | 201123 | 201971 |
| CDS | 202088 | 204251 |
| CDS | 204977 | 205119 |
| CDS | 205514 | 205833 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000262 | Ribosome translation, structural constituent of ribosome, proton-transporting ATP synthase complex assembly, intracellular, signal peptidase complex, signal peptide processing, mRNA processing, Ribosome peptidase activity, |
| coexpression network | CFinderM000599 | mRNA_cis_splicing,_via_spliceosome nuclear_cap_binding_complex RNA_cap_binding hydro-lyase activity, fatty acid biosynthetic process, Biotin_metabolism Fatty_acid_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02213.15 | GYF | 512 | 561 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.