PH01001443G0400's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase family protein, expressed
Blast result AT1G17110 : 3.90E-54
Blast annotation: ubiquitin-specific protease 15
2.Location
Scaffold: PH01001443
Strand: +
| Region | Start | End |
| gene | 275269 | 283120 |
| mRNA | 275269 | 283120 |
| exon | 275269 | 275511 |
| exon | 276132 | 276255 |
| exon | 276498 | 276655 |
| exon | 276738 | 276822 |
| exon | 277430 | 277521 |
| exon | 280073 | 280226 |
| exon | 280646 | 280858 |
| exon | 281480 | 281541 |
| exon | 281641 | 283120 |
| CDS | 275489 | 275511 |
| CDS | 276132 | 276255 |
| CDS | 276498 | 276655 |
| CDS | 276738 | 276822 |
| CDS | 277430 | 277521 |
| CDS | 280073 | 280226 |
| CDS | 280646 | 280858 |
| CDS | 281480 | 281541 |
| CDS | 281641 | 282334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 216 | 302 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.