PH01001490G0140's details annotation
1.Annotation
ICBR annotation: MATE efflux family protein, putative, expressed
Blast result AT1G47530 : 3.00E-150
Blast annotation: MATE efflux family protein
2.Location
Scaffold: PH01001490
Strand: +
| Region | Start | End |
| gene | 115122 | 120018 |
| mRNA | 115122 | 120018 |
| exon | 115122 | 115780 |
| exon | 117718 | 118259 |
| exon | 118382 | 118468 |
| exon | 118527 | 118619 |
| exon | 118779 | 119017 |
| exon | 119149 | 119267 |
| exon | 119347 | 119433 |
| exon | 119534 | 120018 |
| CDS | 115481 | 115780 |
| CDS | 117718 | 118259 |
| CDS | 118382 | 118468 |
| CDS | 118527 | 118619 |
| CDS | 118779 | 119017 |
| CDS | 119149 | 119267 |
| CDS | 119347 | 119433 |
| CDS | 119534 | 119599 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01554.17 | MatE | 55 | 215 |
| PF01554.17 | MatE | 276 | 450 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006855 | drug transmembrane transport |
| GO:0015238 | drug transmembrane transporter activity |
| GO:0015297 | antiporter activity |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.