PH01001493G0360's details annotation
1.Annotation
ICBR annotation: beta-galactosidase precursor, putative, expressed
Blast result AT1G31740 : 2.80E-54
Blast annotation: beta-galactosidase 15
2.Location
Scaffold: PH01001493
Strand: -
| Region | Start | End |
| gene | 233665 | 235823 |
| mRNA | 233665 | 235823 |
| exon | 233665 | 234048 |
| exon | 234137 | 234155 |
| exon | 234320 | 234433 |
| exon | 234520 | 234585 |
| exon | 234888 | 234978 |
| exon | 235060 | 235256 |
| exon | 235341 | 235505 |
| exon | 235606 | 235823 |
| CDS | 233744 | 234048 |
| CDS | 234137 | 234155 |
| CDS | 234320 | 234433 |
| CDS | 234520 | 234585 |
| CDS | 234888 | 234978 |
| CDS | 235060 | 235256 |
| CDS | 235341 | 235505 |
| CDS | 235606 | 235665 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000062 | RLK-Pelle_LRR-XII-1 (from iTAK) cell adhesion, TRAF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.