PH01001504G0060's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed
Blast result AT5G28850 : 0.00E+00
Blast annotation: Calcium-binding EF-hand family protein
2.Location
Scaffold: PH01001504
Strand: +
| Region | Start | End |
| gene | 26016 | 33130 |
| mRNA | 26016 | 33130 |
| exon | 26016 | 26764 |
| exon | 26857 | 26962 |
| exon | 27294 | 27393 |
| exon | 27473 | 27578 |
| exon | 27703 | 27793 |
| exon | 27885 | 28026 |
| exon | 28134 | 28281 |
| exon | 28364 | 28473 |
| exon | 31595 | 31751 |
| exon | 31835 | 31960 |
| exon | 32060 | 33130 |
| CDS | 26363 | 26764 |
| CDS | 26857 | 26962 |
| CDS | 27294 | 27393 |
| CDS | 27473 | 27578 |
| CDS | 27703 | 27793 |
| CDS | 27885 | 28026 |
| CDS | 28134 | 28281 |
| CDS | 28364 | 28473 |
| CDS | 31595 | 31751 |
| CDS | 31835 | 31960 |
| CDS | 32060 | 32200 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001189 | GT31 GlycosylTransferases RNA processing, protein glycosylation, Fructose_and_mannose_metabolism mRNA_surveillance_pathway Amino_sugar_and_nucleotide_sugar_metabolism galactosyltransferase activity, transferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13499.5 | EF-hand_7 | 323 | 423 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), regulatory subunit B'' | ko03015 | K11583 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005509 | calcium ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.