PH01001528G0280's details annotation
1.Annotation
ICBR annotation: ribosomal RNA large subunit methyltransferase J, putative, expressed
Blast result AT5G13830 : 8.60E-81
Blast annotation: FtsJ-like methyltransferase family protein
2.Location
Scaffold: PH01001528
Strand: +
| Region | Start | End |
| gene | 175057 | 177244 |
| mRNA | 175057 | 177244 |
| exon | 175057 | 175616 |
| exon | 175703 | 175789 |
| exon | 175896 | 175958 |
| exon | 176045 | 176146 |
| exon | 176872 | 177244 |
| CDS | 175536 | 175616 |
| CDS | 175703 | 175789 |
| CDS | 175896 | 175958 |
| CDS | 176045 | 176146 |
| CDS | 176872 | 177135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01728.18 | FtsJ | 20 | 231 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0001510 | RNA methylation |
| GO:0008168 | methyltransferase activity |
| GO:0032259 | methylation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.