PH01001538G0180's details annotation
1.Annotation
ICBR annotation: LSM domain containing protein, expressed
Blast result AT3G14080 : 2.80E-57
Blast annotation: Small nuclear ribonucleoprotein family protein
2.Location
Scaffold: PH01001538
Strand: -
| Region | Start | End |
| gene | 149713 | 151355 |
| mRNA | 149713 | 151355 |
| exon | 149713 | 151355 |
| CDS | 150356 | 150679 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01423.21 | LSM | 14 | 80 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA degradation | U6 snRNA-associated Sm-like protein LSm1 | ko03018 | K12620 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.