PH01001543G0160's details annotation
1.Annotation
ICBR annotation: PHD finger protein, putative, expressed
Blast result AT5G26210 : 2.00E-75
Blast annotation: alfin-like 4
2.Location
Scaffold: PH01001543
Strand: +
| Region | Start | End |
| gene | 100472 | 104118 |
| mRNA | 100472 | 104118 |
| exon | 100472 | 100928 |
| exon | 101074 | 101131 |
| exon | 101631 | 101912 |
| exon | 102889 | 103006 |
| exon | 103144 | 104118 |
| CDS | 100688 | 100928 |
| CDS | 101074 | 101131 |
| CDS | 101631 | 101912 |
| CDS | 102889 | 103006 |
| CDS | 103144 | 103422 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Alfin-like |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12165.7 | Alfin | 19 | 145 |
| PF00628.28 | PHD | 205 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.