PH01001548G0350's details annotation
1.Annotation
ICBR annotation: transmembrane protein 93, putative, expressed
Blast result AT5G49540 : 6.20E-36
Blast annotation: Rab5-interacting family protein
2.Location
Scaffold: PH01001548
Strand: +
| Region | Start | End |
| gene | 221112 | 221929 |
| mRNA | 221112 | 221929 |
| exon | 221112 | 221328 |
| exon | 221567 | 221929 |
| CDS | 221260 | 221328 |
| CDS | 221567 | 221659 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07019.11 | Rab5ip | 27 | 105 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.