Annotation of co-expression genes

PH01001556G0100's details annotation

1.Annotation

ICBR annotation: serine/threonine protein phosphatase, putative, expressed

Blast result AT4G03080 : 0.00E+00
Blast annotation: BRI1 suppressor 1 (BSU1)-like 1

2.Location

Scaffold: PH01001556
Strand: +

RegionStartEnd
gene6462878818
mRNA6462878818
exon6462865937
exon6598866048
exon6635966437
exon6652066599
exon6670166795
exon6740067499
exon6815668225
exon6988570028
exon7382273923
exon7414074221
exon7430474471
exon7503275176
exon7525675481
exon7599576165
exon7623676474
exon7664176725
exon7682476922
exon7700977208
exon7730077375
exon7755577690
exon7775977898
exon7815778818
CDS6567365937
CDS6598866048
CDS6635966437
CDS6652066599
CDS6670166795
CDS6740067499
CDS6815668225
CDS6988570028
CDS7382273923
CDS7414074221
CDS7430474471
CDS7503275176
CDS7525675481
CDS7599576165
CDS7623676474
CDS7664176725
CDS7682476922
CDS7700977208
CDS7730077375
CDS7755577690
CDS7775977898
CDS7815778240

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13854.5Kelch_5117155
PF00149.27Metallophos645852

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004721phosphoprotein phosphatase activity
GO:0005506iron ion binding
GO:0005515protein binding
GO:0016787hydrolase activity
GO:0030145manganese ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.