Annotation of co-expression genes

PH01001589G0260's details annotation

1.Annotation

ICBR annotation: kinesin motor domain containing protein, putative, expressed

Blast result AT5G27550 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein

2.Location

Scaffold: PH01001589
Strand: +

RegionStartEnd
gene222374227532
mRNA222374227532
exon222374223445
exon223517223657
exon223736223827
exon223938224028
exon224120224449
exon224657224936
exon225016225177
exon225378225593
exon225717225754
exon225912226075
exon226145226258
exon226356226397
exon226494227532
CDS223349223445
CDS223517223657
CDS223736223827
CDS223938224028
CDS224120224449
CDS224657224936
CDS225016225177
CDS225378225593
CDS225717225754
CDS225912226075
CDS226145226258
CDS226356226397
CDS226494227303

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin199517

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement
GO:0008569minus-end-directed microtubule motor activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.