PH01001590G0260's details annotation
1.Annotation
ICBR annotation: histidine kinase, putative
Blast result AT2G17820 : 1.30E-27
Blast annotation: histidine kinase 1
2.Location
Scaffold: PH01001590
Strand: -
| Region | Start | End |
| gene | 169535 | 173025 |
| mRNA | 169535 | 173025 |
| exon | 169535 | 170134 |
| exon | 170366 | 170605 |
| exon | 171498 | 171598 |
| exon | 172551 | 173025 |
| CDS | 169919 | 170134 |
| CDS | 170366 | 170605 |
| CDS | 171498 | 171598 |
| CDS | 172551 | 172683 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000237 | solute:hydrogen antiporter activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00072.23 | Response_reg | 93 | 221 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000156 | phosphorelay response regulator activity |
| GO:0000160 | phosphorelay signal transduction system |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.