PH01001641G0340's details annotation
1.Annotation
ICBR annotation: RNA polymerase II transcriptional coactivator KELP, putative, expressed
Blast result AT4G10920 : 9.50E-32
Blast annotation: transcriptional coactivator p15 (PC4) family protein (KELP)
2.Location
Scaffold: PH01001641
Strand: +
| Region | Start | End |
| gene | 260957 | 262296 |
| mRNA | 260957 | 262296 |
| exon | 260957 | 261840 |
| exon | 261945 | 262296 |
| CDS | 261478 | 261840 |
| CDS | 261945 | 262124 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Coactivator p15 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08766.10 | DEK_C | 4 | 59 |
| PF02229.15 | PC4 | 120 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003713 | transcription coactivator activity |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.