PH01001676G0010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G38880 : 4.50E-48
Blast annotation: -
2.Location
Scaffold: PH01001676
Strand: -
| Region | Start | End |
| gene | 163 | 10289 |
| mRNA | 163 | 10289 |
| exon | 163 | 573 |
| exon | 1399 | 1430 |
| exon | 3738 | 3831 |
| exon | 4660 | 4734 |
| exon | 5046 | 5135 |
| exon | 5697 | 5700 |
| exon | 5997 | 6201 |
| exon | 9291 | 9450 |
| exon | 10133 | 10289 |
| CDS | 163 | 573 |
| CDS | 1399 | 1430 |
| CDS | 3738 | 3831 |
| CDS | 4660 | 4734 |
| CDS | 5046 | 5135 |
| CDS | 5697 | 5700 |
| CDS | 5997 | 6201 |
| CDS | 9291 | 9450 |
| CDS | 10133 | 10228 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14817.5 | HAUS5 | 2 | 163 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.