PH01001686G0240's details annotation
1.Annotation
ICBR annotation: CS domain containing protein, putative, expressed
Blast result AT4G02450 : 1.70E-21
Blast annotation: HSP20-like chaperones superfamily protein
2.Location
Scaffold: PH01001686
Strand: +
| Region | Start | End |
| gene | 149211 | 152985 |
| mRNA | 149211 | 152985 |
| exon | 149211 | 150555 |
| exon | 150637 | 150796 |
| exon | 150878 | 150906 |
| exon | 150984 | 151056 |
| exon | 151834 | 152985 |
| CDS | 150316 | 150555 |
| CDS | 150637 | 150796 |
| CDS | 150878 | 150906 |
| CDS | 150984 | 151056 |
| CDS | 151834 | 151910 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001268 | protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04969.15 | CS | 22 | 97 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.