PH01001688G0260's details annotation
1.Annotation
ICBR annotation: transposon protein, putative, CACTA, En/Spm sub-class, expressed
Blast result AT2G36010 : 4.20E-60
Blast annotation: E2F transcription factor 3
2.Location
Scaffold: PH01001688
Strand: +
| Region | Start | End |
| gene | 209042 | 214535 |
| mRNA | 209042 | 214535 |
| exon | 209042 | 209899 |
| exon | 211011 | 211176 |
| exon | 211327 | 211383 |
| exon | 211462 | 211547 |
| exon | 211660 | 211748 |
| exon | 211823 | 211901 |
| exon | 212949 | 213001 |
| exon | 213088 | 213138 |
| exon | 213221 | 213269 |
| exon | 213350 | 213415 |
| exon | 213495 | 213589 |
| exon | 213690 | 213816 |
| exon | 213989 | 214535 |
| CDS | 209717 | 209899 |
| CDS | 211011 | 211176 |
| CDS | 211327 | 211383 |
| CDS | 211462 | 211547 |
| CDS | 211660 | 211748 |
| CDS | 211823 | 211901 |
| CDS | 212949 | 213001 |
| CDS | 213088 | 213138 |
| CDS | 213221 | 213269 |
| CDS | 213350 | 213415 |
| CDS | 213495 | 213589 |
| CDS | 213690 | 213816 |
| CDS | 213989 | 214054 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | E2F-DP |
| Transcription_Regulator(from PlantTFDB) | E2F/DP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02319.19 | E2F_TDP | 132 | 195 |
| PF16421.4 | E2F_CC-MB | 220 | 324 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005667 | transcription factor complex |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.