Annotation of co-expression genes

PH01001705G0160's details annotation

1.Annotation

ICBR annotation: RNA recognition motif containing protein, expressed

Blast result AT2G44710 : 1.00E-47
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein

2.Location

Scaffold: PH01001705
Strand: -

RegionStartEnd
gene9325999103
mRNA9325999103
exon9325993609
exon9451094746
exon9484494933
exon9599199103
CDS9337093609
CDS9451094746
CDS9484494933
CDS9599196824

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001757RLK-Pelle_RLCK-VIIa-2 (from iTAK)
protein phosphorylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00076.21RRM_1215282
PF00076.21RRM_1391454

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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