PH01001727G0310's details annotation
1.Annotation
ICBR annotation: PPR repeat containing protein, expressed
Blast result AT5G18950 : 9.20E-51
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01001727
Strand: -
| Region | Start | End |
| gene | 219804 | 224461 |
| mRNA | 219804 | 224461 |
| exon | 219804 | 220419 |
| exon | 221198 | 222647 |
| exon | 224220 | 224461 |
| CDS | 220360 | 220419 |
| CDS | 221198 | 222647 |
| CDS | 224220 | 224368 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 229 | 258 |
| PF13041.5 | PPR_2 | 262 | 304 |
| PF13041.5 | PPR_2 | 332 | 380 |
| PF17177.3 | PPR_long | 384 | 497 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.