PH01001734G0320's details annotation
1.Annotation
ICBR annotation: AR791, putative, expressed
Blast result AT1G52080 : 1.70E-67
Blast annotation: actin binding protein family
2.Location
Scaffold: PH01001734
Strand: +
| Region | Start | End |
| gene | 219589 | 225201 |
| mRNA | 219589 | 225201 |
| exon | 219589 | 222442 |
| exon | 222554 | 222621 |
| exon | 223201 | 223980 |
| exon | 224230 | 225201 |
| CDS | 222250 | 222442 |
| CDS | 222554 | 222621 |
| CDS | 223201 | 223980 |
| CDS | 224230 | 224787 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000907 | SNARE_interactions_in_vesicular_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.