PH01001757G0270's details annotation
1.Annotation
ICBR annotation: suppressor of Mek, putative, expressed
Blast result AT3G06670 : 8.30E-61
Blast annotation: binding
2.Location
Scaffold: PH01001757
Strand: -
| Region | Start | End |
| gene | 221953 | 225756 |
| mRNA | 221953 | 225756 |
| exon | 221953 | 222041 |
| exon | 222459 | 222554 |
| exon | 222642 | 222719 |
| exon | 222819 | 222887 |
| exon | 222971 | 223038 |
| exon | 223182 | 223259 |
| exon | 223337 | 223436 |
| exon | 223672 | 223763 |
| exon | 224444 | 225756 |
| CDS | 222018 | 222041 |
| CDS | 222459 | 222554 |
| CDS | 222642 | 222719 |
| CDS | 222819 | 222887 |
| CDS | 222971 | 223038 |
| CDS | 223182 | 223259 |
| CDS | 223337 | 223436 |
| CDS | 223672 | 223763 |
| CDS | 224444 | 224630 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04802.14 | SMK-1 | 94 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.