PH01001963G0340's details annotation
1.Annotation
ICBR annotation: double-stranded RNA binding motif containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001963
Strand: -
| Region | Start | End |
| gene | 218509 | 222218 |
| mRNA | 218509 | 222218 |
| exon | 218509 | 219209 |
| exon | 219316 | 219386 |
| exon | 220056 | 220129 |
| exon | 220494 | 220559 |
| exon | 221949 | 222218 |
| CDS | 219100 | 219209 |
| CDS | 219316 | 219386 |
| CDS | 220056 | 220129 |
| CDS | 220494 | 220559 |
| CDS | 221949 | 221951 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000193 | L-methionine salvage from methylthioadenosine, arginyl-tRNA aminoacylation, 7-methylguanosine mRNA capping, arginine-tRNA ligase activity, mRNA_(guanine-N7-)-methyltransferase_activity acireductone_dioxygenase_[iron(II)-requiring]_activity double-stranded RNA binding, tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM000379 | arginyl-tRNA aminoacylation, arginine-tRNA ligase activity, tRNA processing, tRNA (guanine-N2-)-methyltransferase activity, tRNA aminoacylation for protein translation, double-stranded RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003725 | double-stranded RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.