PH01002035G0210's details annotation
1.Annotation
ICBR annotation: AAA-type ATPase family protein, putative, expressed
Blast result AT5G16930 : 0.00E+00
Blast annotation: AAA-type ATPase family protein
2.Location
Scaffold: PH01002035
Strand: +
| Region | Start | End |
| gene | 110887 | 116996 |
| mRNA | 110887 | 116996 |
| exon | 110887 | 111671 |
| exon | 111701 | 111796 |
| exon | 112504 | 112536 |
| exon | 112611 | 113031 |
| exon | 113481 | 113571 |
| exon | 114086 | 114422 |
| exon | 114508 | 114656 |
| exon | 115505 | 116996 |
| CDS | 111318 | 111671 |
| CDS | 111701 | 111796 |
| CDS | 112504 | 112536 |
| CDS | 112611 | 113031 |
| CDS | 113481 | 113571 |
| CDS | 114086 | 114422 |
| CDS | 114508 | 114656 |
| CDS | 115505 | 116018 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000717 | tRNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12037.7 | DUF3523 | 119 | 353 |
| PF00004.28 | AAA | 423 | 549 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005524 | ATP binding |
| GO:0017111 | nucleoside-triphosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.