PH01002057G0240's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G02890 : 2.80E-42
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01002057
Strand: -
| Region | Start | End |
| gene | 149473 | 160571 |
| mRNA | 149473 | 160571 |
| exon | 149473 | 151100 |
| exon | 151209 | 151559 |
| exon | 151636 | 151760 |
| exon | 151838 | 152068 |
| exon | 152145 | 152928 |
| exon | 153019 | 153441 |
| exon | 153549 | 154345 |
| exon | 155628 | 155713 |
| exon | 156613 | 157731 |
| exon | 158503 | 158586 |
| exon | 159000 | 160571 |
| CDS | 150394 | 151100 |
| CDS | 151209 | 151559 |
| CDS | 151636 | 151760 |
| CDS | 151838 | 152068 |
| CDS | 152145 | 152928 |
| CDS | 153019 | 153441 |
| CDS | 153549 | 154345 |
| CDS | 155628 | 155713 |
| CDS | 156613 | 157731 |
| CDS | 158503 | 158586 |
| CDS | 159000 | 159074 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.