PH01002153G0330's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G16630 : 3.90E-13
Blast annotation: -
2.Location
Scaffold: PH01002153
Strand: +
| Region | Start | End |
| gene | 218353 | 222323 |
| mRNA | 218353 | 222323 |
| exon | 218353 | 219351 |
| exon | 219642 | 221762 |
| exon | 221853 | 222323 |
| CDS | 219241 | 219351 |
| CDS | 219642 | 221762 |
| CDS | 221853 | 221933 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000375 | RLK-Pelle_LRR-III (from iTAK) protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, ATP binding, RLK-Pelle_LRR-VII-1 (from iTAK) protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.