PH01002165G0150's details annotation
1.Annotation
ICBR annotation: FGGY family of carbohydrate kinases, putative, expressed
Blast result AT4G30310 : 5.80E-64
Blast annotation: FGGY family of carbohydrate kinase
2.Location
Scaffold: PH01002165
Strand: -
| Region | Start | End |
| gene | 110887 | 116355 |
| mRNA | 110887 | 116355 |
| exon | 110887 | 111327 |
| exon | 111752 | 111908 |
| exon | 112344 | 112464 |
| exon | 112548 | 112667 |
| exon | 113020 | 113128 |
| exon | 113526 | 113695 |
| exon | 114197 | 114209 |
| exon | 115139 | 116355 |
| CDS | 111196 | 111327 |
| CDS | 111752 | 111908 |
| CDS | 112344 | 112464 |
| CDS | 112548 | 112667 |
| CDS | 113020 | 113128 |
| CDS | 113526 | 113695 |
| CDS | 114197 | 114209 |
| CDS | 115139 | 115261 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02782.15 | FGGY_C | 132 | 272 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016773 | phosphotransferase activity, alcohol group as acceptor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.