PH01002166G0010's details annotation
1.Annotation
ICBR annotation: 2-aminoethanethiol dioxygenase, putative, expressed
Blast result AT5G39890 : 2.70E-48
Blast annotation: Protein of unknown function (DUF1637)
2.Location
Scaffold: PH01002166
Strand: +
| Region | Start | End |
| gene | 5707 | 8423 |
| mRNA | 5707 | 8423 |
| exon | 5707 | 6482 |
| exon | 7210 | 7271 |
| exon | 7467 | 7623 |
| exon | 7776 | 7973 |
| exon | 8108 | 8423 |
| CDS | 6260 | 6482 |
| CDS | 7210 | 7271 |
| CDS | 7467 | 7623 |
| CDS | 7776 | 7973 |
| CDS | 8108 | 8235 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000058 | cysteamine dioxygenase activity, LBD Transcription_Regulator(from PlantTFDB) oxidation-reduction process, Taurine_and_hypotaurine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07847.11 | PCO_ADO | 93 | 254 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0047800 | cysteamine dioxygenase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.