PH01002175G0240's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family domain containing protein, expressed
Blast result AT3G14790 : 0.00E+00
Blast annotation: rhamnose biosynthesis 3
2.Location
Scaffold: PH01002175
Strand: -
| Region | Start | End |
| gene | 238808 | 242567 |
| mRNA | 238808 | 242567 |
| exon | 238808 | 239774 |
| exon | 239923 | 242567 |
| CDS | 239322 | 239774 |
| CDS | 239923 | 241473 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF16363.4 | GDP_Man_Dehyd | 11 | 316 |
| PF04321.16 | RmlD_sub_bind | 381 | 553 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Amino sugar and nucleotide sugar metabolism | UDP-glucose 4,6-dehydratase [EC:4.2.1.76] | ko00520 | K12450 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008831 | dTDP-4-dehydrorhamnose reductase activity |
| GO:0044237 | cellular metabolic process |
| GO:0045226 | extracellular polysaccharide biosynthetic process |
| GO:0050662 | coenzyme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.