PH01002182G0200's details annotation
1.Annotation
ICBR annotation: OsFBX400 - F-box domain containing protein, expressed
Blast result AT3G18150 : 1.50E-10
Blast annotation: RNI-like superfamily protein
2.Location
Scaffold: PH01002182
Strand: -
| Region | Start | End |
| gene | 141005 | 145501 |
| mRNA | 141005 | 145501 |
| exon | 141005 | 142987 |
| exon | 143071 | 143266 |
| exon | 143362 | 143517 |
| exon | 144116 | 145501 |
| CDS | 142386 | 142987 |
| CDS | 143071 | 143266 |
| CDS | 143362 | 143517 |
| CDS | 144116 | 145108 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 58 | 91 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.